Helping travelers to find the best flight offers
Flaut.Travel was designed and developed by a team dedicated to making the process of searching, comparing and booking airline tickets as easy and convenient as possible. Our service helps travelers to find and buy the cheapest flights from Manila to Kota Kinabalu. We have connected more than 40 airlines and airline ticketing agencies to help you find the most suitable and affordable flight option.
The minimum one-way ticket price from Manila to Kota Kinabalu is $55 (December 2025), while the maximum is $85 (January 2026). On average, a ticket costs $65–$140.
A direct flight is the easiest way to get to your destination. The following airlines operate non-stop flights from Manila to Kota Kinabalu:
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We keep tight track on airlines' pre-holidays sales and other special offers occurences all the time to let you save maximum amount of funds while traveling to your family or just going out on vacation.
The cheapest one-way flight from Manila to Kota Kinabalu departs on 04/10/2026, is operated by AirAsia Zest and costs $53
The cheapest roundtrip flight from Manila to Kota Kinabalu departs on 04/10/2026, is operated by AirAsia Zest and costs $110
Fastest flight from Manila to Kota Kinabalu takes 2h 10m
There are direct flights on this route 4 days a week: Mo, We, Fr, and Sa
The distance between Manila and Kota Kinabalu is 1105km (685 miles). The average flight duration is 2h 12m. There are 7 direct flights from Manila to Kota Kinabalu. Manila and Kota Kinabalu are in the same time zone. Flights from Manila begin at 4:15 PM. The latest flight from Manila departs at 11:10 PM
AirAsia Zest
Su, Mo, We, and Fr
Starting at $56
Looking for direct flights from Manila to Kota Kinabalu? Look no further! We've got you covered. Fly hassle-free from the Philippines to Malaysia with direct flights available for this route. Whether you're planning a business trip or a relaxing vacation, booking your air tickets just became easier. No need to worry about layovers or transfers. Sit back, relax, and enjoy a smooth and convenient journey. If, however, you can't find direct flights for your preferred dates, fret not! You can still reach Kota Kinabalu by choosing alternative routes. One option is to transit in Kuala Lumpur, Malaysia's vibrant capital, before catching your connecting flight to Kota Kinabalu. Another possibility is to transit in Singapore, a bustling city known for its efficient airport and diverse attractions. Both options allow you to explore additional destinations while en route to Kota Kinabalu. Start your air ticket search now and experience a seamless journey from Manila to Kota Kinabalu with our user-friendly website.
Manila — Kota Kinabalu
12/10/2025
Departure
Direct flight
Z2501
Starting at $91
Manila — Kota Kinabalu
12/12/2025
Departure
Direct flight
Z2501
Starting at $98
Manila — Kota Kinabalu
12/24/2025
Departure
Direct flight
Z2501
Starting at $125
Manila — Kota Kinabalu
01/05/2026
Departure
Direct flight
Z2501
Starting at $111
Manila — Kota Kinabalu
01/09/2026
Departure
Direct flight
Z2501
Starting at $78
Manila — Kota Kinabalu
03/30/2026
Departure
Direct flight
Z2501
Starting at $64
Manila — Kota Kinabalu
04/10/2026
Departure
Direct flight
Z2501
Starting at $82
Manila — Kota Kinabalu
04/11/2026
Departure
Direct flight
Z2501
Starting at $57
Starting at $53
Starting at $147
The route Manila — Kota Kinabalu is served by several airlines: AirAsia Zest and Cebu Pacific. This gives passengers more freedom in choosing flights. You can consider not only the price but also schedules, baggage policies, and onboard service. Our service compares all offers so you can find tickets from $53 and choose the most convenient option. Thanks to airline competition, you may also find promotional fares or special offers, helping you save even more. Plan your trip in advance and choose the best flights without overpaying.
The cheapest flight ticket from Manila to Kota Kinabalu according to data for the last 48 hours costs $53
Often the best time to buy tickets from Manila to Kota Kinabalu is 2 months before departure.
Based on statistics over the past years, the lowest prices for flights from Manila to Kota Kinabalu can be found flying in these months: December, November, January.
The fastest flights from Manila to Kota Kinabalu start from 2 hours 10 minutes in the air.
The following airlines operate direct flights on the route Manila — Kota Kinabalu: AirAsia Zest
We couldn't find any special offers for flights from Manila to Kota Kinabalu