Airlines operating on route
Below you will find a list of airlines operating flights on the Manila — Kota Kinabalu route and the starting prices for flights of each specific airline on it.
Starting at $44
Starting at $153
Helping travelers to find the best flight offers
We carefully collect statistics on the search and pricing of airlines and, based on these data, we make an assumption about future prices. Thus, you can better understand which season is the cheapest to fly from Manila to Kota Kinabalu
Below you will find a list of airlines operating flights on the Manila — Kota Kinabalu route and the starting prices for flights of each specific airline on it.
Starting at $44
Starting at $153
A direct flight is the most convenient and comfortable way to fly from Manila to Kota Kinabalu, despite the fact that sometimes flights with transfers can cost significantly less.
A direct flight is the easiest way to get to your destination. The following airlines operate non-stop flights from Manila to Kota Kinabalu:
AirAsia Zest
Every day
Starting at $42
We keep tight track on airlines' pre-holidays sales and other special offers occurences all the time to let you save maximum amount of funds while traveling to your family or just going out on vacation.
Manila — Kota Kinabalu
06/07/2025
Departure date
Direct flight
Z2501
Starting at $69
Manila — Kota Kinabalu
06/08/2025
Departure date
Direct flight
Z2501
Starting at $68
Manila — Kota Kinabalu
06/10/2025
Departure date
Direct flight
Z2501
Starting at $73
Manila — Kota Kinabalu
06/15/2025
Departure date
Direct flight
Z2501
Starting at $46
Manila — Kota Kinabalu
07/08/2025
Departure date
Direct flight
Z2501
Starting at $62
Manila — Kota Kinabalu
07/22/2025
Departure date
Direct flight
Z2501
Starting at $57
Manila — Kota Kinabalu
07/25/2025
Departure date
Direct flight
Z2501
Starting at $67
Manila — Kota Kinabalu
07/29/2025
Departure date
Direct flight
Z2501
Starting at $63
Manila — Kota Kinabalu
10/20/2025
Departure date
Direct flight
Z2501
Starting at $44
Manila — Kota Kinabalu
10/26/2025
Departure date
Direct flight
Z2501
Starting at $48
Flaut.Travel was designed and developed by a team dedicated to making the process of searching, comparing and booking airline tickets as easy and convenient as possible. Our service helps travelers to find and buy the cheapest flights from Manila to Kota Kinabalu. We have connected more than 40 airlines and airline ticketing agencies to help you find the most suitable and affordable flight option.
The cheapest flight ticket from Manila to Kota Kinabalu according to data for the last 48 hours costs $38
Often the best time to buy tickets from Manila to Kota Kinabalu is 2 months before departure.
Based on statistics over the past years, the lowest prices for flights from Manila to Kota Kinabalu can be found flying in these months: July, October, June.
The fastest flights from Manila to Kota Kinabalu start from 2 hours 10 minutes in the air.
The following airlines operate direct flights on the route Manila — Kota Kinabalu: AirAsia Zest
The cheapest one-way flight from Manila to Kota Kinabalu departs on 07/22/2025, is operated by AirAsia Zest and costs $38
The cheapest roundtrip flight from Manila to Kota Kinabalu departs on 07/15/2025, is operated by AirAsia Zest and costs $85
Fastest flight from Manila to Kota Kinabalu takes 2h 10m
There are direct flights on this route 5 days a week: Su, Mo, Tu, Fr, and Sa
The distance between Manila and Kota Kinabalu is 1105km (685 miles). The average flight duration is 2h 10m. There are 8 direct flights from Manila to Kota Kinabalu. Manila and Kota Kinabalu are in the same time zone. Flights from Manila begin at 8:35 PM. The latest flight from Manila departs at 11:10 PM.
We couldn't find any special offers for flights from Manila to Kota Kinabalu
