Cheap Flights from New York to San Juan — $100

More than 8 airlines operate flights from New York to San Juan, including JetBlue Airways, Allegiant Air, American Airlines, Frontier Airlines, United Airlines, Southwest Airlines, Mexicana de Aviación, and Air Canada. This is a popular route, so passengers can choose tickets based on budget and preferences. Ticket prices start from $100, and our service lets you instantly compare all options. The variety of offers simplifies planning: you can choose budget fares or more comfortable options with baggage included or extra services. We help you find the best deals so your trip is cost-efficient.

The only airline operating direct flights from New York to San Juan is JetBlue Airways. Flights operate every day.

The cost of a one-way flight from New York to San Juan ranges from $106 (September 2026) to $202 (June 2027). On average, the ticket price is about $141–$148.

John F. Kennedy International (JFK) is New York’s primary international gateway and a major hub for long-haul carriers and full-service airlines, often serving premium and alliance traffic. Located about 16 miles southeast of Midtown Manhattan, ground transfers include the AirTrain plus Long Island Rail Road (around 35–60 minutes), subway via the AirTrain (about 60–90 minutes), taxis or rideshares (35–70 minutes depending on traffic), with fares ranging from moderate fixed airport fees to higher taxi/rideshare costs. Pros: extensive international connections and full-service amenities; cons: can be busy and subject to heavy traffic for road transfers. LaGuardia Airport (LGA) typically functions as New York’s primary domestic and short-haul airport, favored by legacy and low-cost carriers for frequent, regional flights. It sits roughly 8 miles from Midtown Manhattan, with buses and subway connections (plus shuttle services) usually taking 30–60 minutes, taxis or rideshares taking 20–40 minutes depending on traffic, and fares often in the lower-to-moderate range relative to longer transfers. Pros: closer to Manhattan and convenient for quick domestic hops; cons: fewer long-haul options and can be congested with limited rail links compared with larger hubs. Newark Liberty International (EWR), in neighboring New Jersey, operates as a key international and domestic hub often used by full-service airlines and alliance partners; it can sometimes offer competitive pricing versus other New York-area airports. It’s located about 16–20 miles from Midtown Manhattan; the AirTrain plus NJ Transit or Amtrak typically takes 30–50 minutes to Penn Station, while taxis or rideshares generally take 30–60 minutes depending on traffic, with fares that can vary widely but are often comparable to JFK transfers. Pros: robust international schedules and frequent rail links; cons: can be less convenient for parts of Queens and Brooklyn and subject to interstate traffic delays.

Luis Muñoz Marín International Airport (SJU) is Puerto Rico’s main international gateway and typically serves a mix of full-service carriers and low-cost airlines connecting North America, the Caribbean and Latin America. Located about 8 miles (13 km) southeast of San Juan’s historic Old San Juan, travel to the city center can take roughly 15–30 minutes by taxi or rideshare and about 25–45 minutes by public bus; fares for road options generally range from modest bus fares to moderate taxi or ride costs. SJU is convenient for international transfers and offers extensive amenities, though peak periods can be busy and parking rates or terminal queues may feel less budget-friendly for quick trips.