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Fly direct from Nagasaki to Tokyo for the quickest, most convenient way to go between Kyushu and the capital — fewer hassles, no long layovers, and more time to enjoy the city. While connecting options can sometimes be cheaper, a nonstop flight saves hours and makes travel far more comfortable, so consider booking direct for a smoother trip.
A direct flight is the easiest way to get to your destination. The following airlines operate non-stop flights from Nagasaki to Tokyo:
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Answers to questions about the route that travelers are most interested in.
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The route Nagasaki — Tokyo is served by several airlines: All Nippon Airways, Solaseed Air, and Jetstar Japan. This gives passengers more freedom in choosing flights. You can consider not only the price but also schedules, baggage policies, and onboard service. Our service compares all offers so you can find tickets from $74 and choose the most convenient option. Thanks to airline competition, you may also find promotional fares or special offers, helping you save even more. Plan your trip in advance and choose the best flights without overpaying.
Nagasaki — Tokyo
04/20/2026
Departure
Direct flight
NH662
starting at $199
Nagasaki — Tokyo
06/07/2026
Departure
Direct flight
6J34
starting at $92
Nagasaki — Tokyo
08/17/2026
Departure
Direct flight
NH2438
starting at $204
Unable to find information about the schedule of direct flights from
Nagasaki Airport (NGS) serves as the region’s primary gateway, functioning mainly as a domestic and short-haul international airport rather than a major global hub. It typically handles flights from domestic carriers and low-cost operators alongside a few seasonal international services, so fares can be competitive compared with larger Japanese airports. The airport is located in the town of Ōmura, roughly 20–30 km from central Nagasaki; travel times are commonly 30–50 minutes by car depending on traffic. Ground options include airport limousine buses to the city center (about ¥800–¥1,200), taxis (higher fares, quicker door-to-door), and rental cars. Pros: generally compact and easy to navigate with short transfer times; cons: fewer long-haul connections and limited dining/retail variety compared with major hubs.
The cheapest one-way flight from Nagasaki to Tokyo departs on 06/07/2026, is operated by Jetstar Japan and costs $74
There is no information about the cheapest roundtrip flight from Nagasaki to Tokyo
Fastest flight from Nagasaki to Tokyo takes 1h 45m
There are direct flights on this route 2 days a week: Su and Mo
The distance between Nagasaki and Tokyo is 948km (588 miles). The average flight duration is 1h 50m. There are 64 direct flights from Nagasaki to Tokyo. Nagasaki and Tokyo are in the same time zone. Flights from Nagasaki begin at 7:30 AM. The latest flight from Nagasaki departs at 9:10 PM
Tokyo is served by two main airports with distinct roles. Narita International (NRT), located about 60–65 km east of central Tokyo, functions as the primary international gateway and typically handles long-haul and full-service carriers; travel into the city usually takes 60–90 minutes by Narita Express or airport limousine buses, with fares commonly in the mid-range for airport transfers. Haneda (HND), much closer at roughly 15–20 km south of central Tokyo, increasingly operates as the convenient international and domestic hub favored by full-service and some low-cost airlines; trains like the Keikyu Line or Tokyo Monorail link to the city in about 15–30 minutes with modest fares. Pros: Narita can offer more international connections and often competitive long-haul pricing, while Haneda delivers faster city access and greater convenience for short stays. Cons: Narita’s distance can add time and cost to ground transfers, and Haneda may be pricier for some international routes or have busier peak-time crowds.
The cheapest flight ticket from Nagasaki to Tokyo according to data for the last 48 hours costs $74
Often the best time to buy tickets from Nagasaki to Tokyo is 2 months before departure.
Based on statistics over the past years, the lowest prices for flights from Nagasaki to Tokyo can be found flying in these months: June, May, August.
The fastest flights from Nagasaki to Tokyo start from 1 hour 45 minutes in the air.
The following airlines operate direct flights on the route Nagasaki — Tokyo: All Nippon Airways, Solaseed Air
The minimum one-way ticket price from Nagasaki to Tokyo is $57 (June 2026), while the maximum is $131 (August 2026). On average, a ticket costs $92–$218.
Flight costs from Nagasaki to Tokyo climb toward the middle of the period, then start to drop. By choosing the right dates, you can save noticeably.
Prices rise from June 2026 to August 2026 (+130%), then decline from May 2026 to June 2026 (35%). The cheapest tickets are in May 2026–June 2026 (averaging $72), while the priciest are in June 2026–August 2026 ($94).
For savings, plan your flight for May 2026–June 2026 — you could save up to 23%. Try to avoid June 2026–August 2026 when possible: prices are at their highest then.
Price spread on this route is 33%. Costs depend heavily on the season, so flexibility in choosing your departure month is especially valuable here.
We couldn't find any special offers for flights from Nagasaki to Tokyo